Overview

Title

BioMCP: Biomedical Model Context Protocol

How to Use

BioMCP is an open-source toolkit that integrates with AI assistants and agents to provide specialized biomedical knowledge. It can be installed via Python or run directly from the command line. Users can configure it in Claude Desktop for seamless interaction or use the CLI for direct database queries.

Key Features

• Structured access to biomedical data sources (PubMed, ClinicalTrials.gov, MyVariant.info)
• Natural language queries for specialized databases
• Comprehensive MCP tools for literature, clinical trials, and genomic variants
• Enterprise-grade extension (OncoMCP) with HIPAA compliance and advanced features
• Command-line interface for direct interaction

Use Cases

• Biomedical research – Retrieve and analyze scientific literature, clinical trials, and genetic variants
• AI-assisted diagnostics – Enhance AI models with up-to-date biomedical knowledge
• Clinical trial matching – Identify relevant trials based on conditions, phases, and outcomes
• Precision medicine – Leverage genomic variant annotations for personalized healthcare
• Healthcare integration – Connect with EHR systems for real-time data access